Mass Spectrometric Analysis of Ehrlichia chaffeensis Tandem Repeat Proteins Reveals Evidence of Phosphorylation and Absence of Glycosylation

Ehrlichia chaffeensis has a small subset of immunoreactive secreted, acidic (pI approximately 4), tandem repeat (TR)-containing proteins (TRPs), which exhibit abnormally large electrophoretic masses that have been associated with glycosylation of the TR domain.In this study, we examined the extent and nature of posttranslational modifications on the native TRP47 and TRP32 using mass spectrometry. Matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) demonstrated that the mass of native TRP47 (33,104.5 Da) and TRP32 (22,736.8 Da) were slightly larger (179- and 288-Da, respectively) than their predicted masses. The anomalous migration of native and recombinant TRP47, and the recombinant TR domain (C-terminal region) were normalized by 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDC) modification of negatively charged carboxylates to neutral amides. Exhaustive tandem mass spectrometric analysis (92% coverage) performed on trypsin and Asp-N digested native TRP47 identified peptides consistent with their predicted masses. Two TRP47 peptides not identified were located in the normally migrating amino (N)-terminal region of TRP47 and contained predicted phosphorylation sites (tyrosine and serine residues). Moreover, native TRP47 was immunoprecipitated from E. chaffeensis-infected cell lysate with anti-phosphotyrosine (anti-pTyr) antibody.TRP47 and TRP32 are not modified by glycans and the substantial net negative charge of the ehrlichial TRPs, and particularly the highly acidic TRs present within the ehrlichial TRPs, is responsible for larger-than-predicted masses. Furthermore, this study provides evidence that the N-terminal region of the TRP47 is tyrosine phosphorylated

New FxLMAT-Based Algorithms for Active Control of Impulsive Noise

In the presence of non-Gaussian impulsive noise (IN) with a heavy tail, active noise control (ANC) algorithms often encounter stability problems. While adaptive filters based on the higher-order error power principle have shown improved filtering capability compared to the least mean square family algorithms for IN, however, the performance of the filtered-x least mean absolute third (FxLMAT) algorithm tends to degrade under high impulses. To address this issue, this paper proposes three modifications to enhance the performance of the FxLMAT algorithm for IN. To improve stability, the first alteration i.e. variable step size FxLMAT (VSSFxLMAT)algorithm is suggested that incorporates the energy of input and error signal but has slow convergence. To improve its convergence, the second modification i.e. filtered x robust normalized least mean absolute third (FxRNLMAT) algorithm is presented but still lacks robustness. Therefore, a third modification i.e. modified filtered-x RNLMAT (MFxRNLMAT) is devised, which is relatively stable when encountered with high impulsive noise. With comparable computational complexity, the proposed MFxRNLMAT algorithm gives better robustness and convergence speed than all variants of the filtered-x least cos hyperbolic algorithm, and filtered-x least mean square algorithm

Exploring the linkage between root system architecture and grain iron content in wheat (Triticum aestivum L.)

Iron (Fe) is a vital element that is equally important for plants, animals, and humans. High Fe concentrations in wheat grains have reliance on plant roots, the hidden half of the plant with a role in nutrient mining. Enhanced grain Fe content of wheat can positively mitigate Fe malnutrition in poor populations. In the present study, 100 wheat varieties were studied to identify the root architectural characteristics in relation to grain Fe concentration. Germinated seeds were transplanted in a rhizobox kept in a standard nutrient solution and were harvested 12 days after transplanting. Roots were scanned and the images were processed using smart root software. A total of 12 wheat varieties, which had a vigorous and weak root system architecture (RSA), in combination with higher and lower Fe grain concentrations, were selected using principal component analysis. The uptake and translocation of Fe from root to shoot were determined through a pot experiment conducted for the above-mentioned 12 wheat varieties, with or without Fe fertilizer applied as FeSO4 to the soil. The data obtained from the pot experiment revealed that Dharabi-11 with vigorous RSA exhibited the highest grain Fe concentration (57.20 mg kg−1), low phytate concentration (6.50 mg kg−1), and maximum 1,000 grain weight, whereas Ujala-16 with weaker RSA had the lowest grain Fe concentration (13.33 mg kg−1), highest phytate concentration (9.07 mg kg−1), and lowest 1,000 grain weight. There were also varieties showing higher grain Fe concentrations with weaker RSA and vice versa. Although it is indicated that vigorous RSA leads to high grain Fe concentration, it is not the sole factor in high grain Fe concentration. Nevertheless, the results demonstrate that large genetic diversity is available among indigenous wheat germplasm in terms of grain Fe concentration and RSA. This information may be utilized in the development of new varieties through conventional and marker-assisted breeding programs using RSA traits for Fe biofortification in wheat, leading to the mitigation of Fe malnutrition

Sugar Beet Cultivation in the Tropics and Subtropics: Challenges and Opportunities

Sugar beet, an important sugar crop, is particularly cultivated in humid regions to produce beet sugar, fulfilling about 25% of the world’s sugar requirement, supplementing cane sugar. However, sugar beet is not well adopted in the farming system of the tropics and subtropics, which is largely due to the historically well-established production technology of sugarcane and the lower awareness among local growers of sugar beet cultivation. Thus, the poor understanding of pest and disease management and the lack of processing units for sugar beet partially hinder farmers in the large-scale adaptation of sugar beet in the tropics and subtropics. Recent climatic developments have drawn attention to sugar beet cultivation in those regions, considering the low water demand and about half the growing duration (5–6 months) in contrast to sugarcane, sparing agricultural land for an extra crop. Nevertheless, a considerable knowledge gap exists for sugar beet when closely compared to sugarcane in tropical and subtropical growth conditions. Here, we examined the leverage of existing published articles regarding the significance and potential of sugar beet production in the tropics and subtropics, covering its pros and cons in comparison to sugarcane. The challenges for sugar beet production have also been identified, and possible mitigation strategies are suggested. Our assessment reveals that sugar beet can be a promising sugar crop in tropical and subtropical regions, considering the lower water requirements and higher salt resistance

Association between Self-Reported Bruxism and Sleeping Patterns among Dental Students in Saudi Arabia: A Cross-Sectional Study

Objectives. The aim of this cross-sectional study was to identify sleeping patterns among dental students and their association with self-reported bruxism in Riyadh Colleges of Dentistry and Pharmacy (RCsDP). Methods. A cross-sectional study was performed including 549 students (67 men and 482 women). A structured questionnaire was adopted from The PSQI (The Pittsburgh Sleep Questionnaire Index) used for data collection. It included questions which are categorized into sleeping habits, sleep-related symptoms, and additional questions concerning bruxism. This questionnaire was randomly distributed among all college preclinical and postclinical students. Sleep bruxism diagnosis was based on self-reported data. The data were analyzed using Chi-square tests through SPSS software for Windows. Results. Statistical analyses revealed significant correlations between self-reported bruxism and sleeping habits including sleep initiation (χ2=22.6, p=0.000), continuous sleep until morning (χ2=19.2, p=0.001), nighttime sleep duration (χ2=20.2, p=0.000), and length of daytime naps (χ2=28.35, p=0.000). There was an association between self-reported bruxism and sleeping-related symptoms including awakening early in the morning before the usual time without a cause (χ2=16.52, p=0.000) and increased nightmares (χ2=13.7, p=0.001). Conclusions. Poor sleeping pattern was an important factor among dental students, who reported sleep bruxism

Modifications in Glass Ionomer Cements: Nano-Sized Fillers and Bioactive Nanoceramics.

Glass ionomer cements (GICs) are being used for a wide range of applications in dentistry. In order to overcome the poor mechanical properties of glass ionomers, several modifications have been introduced to the conventional GICs. Nanotechnology involves the use of systems, modifications or materials the size of which is in the range of 1-100 nm. Nano-modification of conventional GICs and resin modified GICs (RMGICs) can be achieved by incorporation of nano-sized fillers to RMGICs, reducing the size of the glass particles, and introducing nano-sized bioceramics to the glass powder. Studies suggest that the commercially available nano-filled RMGIC does not hold any significant advantage over conventional RMGICs as far as the mechanical and bonding properties are concerned. Conversely, incorporation of nano-sized apatite crystals not only increases the mechanical properties of conventional GICs, but also can enhance fluoride release and bioactivity. By increasing the crystallinity of the set matrix, apatites can make the set cement chemically more stable, insoluble, and improve the bond strength with tooth structure. Increased fluoride release can also reduce and arrest secondary caries. However, due to a lack of long-term clinical studies, the use of nano-modified glass ionomers is still limited in daily clinical dentistry. In addition to the in vitro and in vivo studies, more randomized clinical trials are required to justify the use of these promising materials. The aim of this paper is to review the modification performed in GIC-based materials to improve their physicochemical properties

Long-term trends of direct nitrous oxide emission from fuel combustion in South Asia

An increasing concentration of nitrous oxide (N2O) in the global atmosphere can perturb the ecological balance, affecting the climate and human life. South Asia, one of the world's most populous regions, is a hotspot for N2O emission. Although agriculture traditionally dominated the region, economic activities are rapidly shifting towards industry and energy services. These activites may become the largest emitters of N2O in future. Yet, few attempts have been made to estimate long-term direct N2O emission from fuel combustion for the different energy-consuming sectors in the South Asian region. Therefore, the present study developed a comprehensive sectoral N2O emission inventory for South Asian countries for the time period of 1990–2017, with projections till 2041. It revealed that the average N2O emission from fuel combustion in the South Asia region is about 40.96 Gg yr−1 with a possible uncertainty of ±12 Gg yr−1, showing an increase of more than 100% from 1990 to 2017. Although India is the major contributor, with an average of 34 Gg yr−1 of N2O emissions, in terms of growth, small countries like Bhutan and Maldives are dominating other South Asian countries. Sector-wise, the residential sector contributed a maximum emission of 14.52 Gg yr−1 of N2O but this is projected to reduce by more than 50% by 2041. This is because of the successful promotion of cleaner fuels like liquefied petroleum gas over more polluting fuelwood. Power generation contributed 9.43 Gg yr−1of N2O emissions, exhibiting a maximum growth of 395%, followed by road transport (289%) and industry (231%). Future N2O emissions from transport, power and industry are projected to rise by 2.8, 3.3, and 23.9 times their 2017 estimates, respectively, due to the incapability of current policies to combat rising fossil fuel consumption. Mitigation options, such as replacing diesel and compressed natural gas vehicles with electricity-driven vehicles, can decelerate N2O emissions to 45% by 2041 for road transport. A 41% reduction is possible by displacing coal with renewables in the power and industry sectors. Overall, the South Asian contribution to global N2O emissions has enlarged from 2.7% in 1990 to 5.7% in 2007–2016, meaning there is an urgent need for N2O emission mitigation in the region

SPEECHLESS and MUTE Mediate Feedback Regulation of Signal Transduction during Stomatal Development

Stomatal density, spacing, and patterning greatly influence the efficiency of gas exchange, photosynthesis, and water economy. They are regulated by a complex of extracellular and intracellular factors through the signaling pathways. After binding the extracellular epidermal patterning factor 1 (EPF1) and 2 (EPF2) as ligands, the receptor-ligand complexes activate by phosphorylation through the MAP-kinase cascades, regulating basic helix-loop-helix (bHLH) transcription factors SPEECHLESS (SPCH), MUTE, and FAMA. In this review, we summarize the molecular mechanisms and signal transduction pathways running within the transition of the protodermal cell into a pair of guard cells with a space (aperture) between them, called a stoma, comprising asymmetric and symmetric cell divisions and draw several functional models. The feedback mechanisms involving the bHLH factors SPCH and MUTE are not fully recognized yet. We show the feedback mechanisms driven by SPCH and MUTE in the regulation of EPF2 and the ERECTA family. Intersections of the molecular mechanisms for fate determination of stomatal lineage cells with the role of core cell cycle-related genes and stabilization of SPCH and MUTE are also reported

Size, geography, and GVC participation of firms in Nigeria and Rwanda: Implications for the AfCFTA

Global value chains (GVC) have recently become an important developmental issue and have become prominent within the development community. Empirical studies on the peculiar nature of firms (small-scale) in the GVC are sparse, especially in Africa. Thus, the present study empirically examines whether or not the size of the firm matters in their GVC participation in Africa. It also investigates if a firm’s geographical location spurs GVC participation. The study answers the above research questions using the World Bank's Enterprise Survey database for two African countries, namely: Nigeria, and Rwanda. Adopting a logit regression model, the findings show that firms in Africa are predominantly small-scale and sole proprietorships. The size of the firm, the legal status of the firm, firm access to ICTs, managerial experience, and the geographical location of the firm are crucial drivers of firms' GVC participation in Nigeria and Rwanda. Policy implications and recommendations for the AfCFTA are discussed in the paper